Good day all,
I am not sure what they flew into / through, but I doubt it was anything really severe.
In that part of the world, over the tropics, and with little or no upper-air dynamics, strong storms do nothing more that just "wet the palm trees".
Flying through this stuff, however, is a different story. Tropical thunderstorms can be a very dangerous thing to fly through.
I remember flying back from Panama in 1997 and the pilit decided to punch one of those "small" tropical cells along the ITCZ. Nailed everyone in their seat at twice the pull of gravity for a few seconds (from the updraft), then nearly lifted me out, straining in the lap-belt.
Throw in something like this with a wire-chafing problem, or weakened structure, and then you really have problems.