Just beware of a few things... first, initializing off the GFS would give a different result than initializing off the NAM analysis, however at T382 resolution, the true resolution of the GFS over the central US is closer to 40 km... much wider than the NAM 12km, so it may be less than ideal for initializing a mesoscale model without several nests. Also... most operational models run with over 60 vertical levels, granted some of these are stratospheric, but many are located in the troposphere. I ran a study using a similar configuration of the WRF-ARW last year over Minnesota and ran into a smattering of problems generating convection, simply because the vertical resolution was too rough to capture important features. Also I noticed there is a 200 mb top on the model... this might be pretty low and can allow spurious gravity waves to essentially propagate and grow along the top of the model (I had problems with this in my study too). Very cool though, and a tip of the hat to you for setting this up, I know from experience that it can be a royal pain in the butt to even get to the point of outputting something useful.